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Primary Immunodeficiency

MHC Class II Deficiency (Bare Lymphocyte Syndrome Type II)

A rare inherited disorder in which immune cells fail to display MHC class II molecules, leading to severe, recurrent infections and impaired antibody responses from early infancy.

  • Combined Immunodeficiency
  • Hematopoietic Stem Cell Transplant Access
  • Specialist Immunology Review
Typical Onset
Infancy
Inheritance Pattern
Autosomal Recessive
Key Genes
CIITA, RFX5, RFXAP, RFXANK
Definitive Treatment
Allogeneic HSCT

Condition Overview

MHC Class II Deficiency, also called Bare Lymphocyte Syndrome Type II, is a rare inherited disorder of the immune system. Cells that should display human leukocyte antigen (HLA) class II molecules on their surface fail to do so because of mutations in genes that regulate class II gene expression, rather than in the HLA genes themselves.

Because class II molecules are essential for activating helper T cells and coordinating antibody production, affected infants typically develop severe, recurrent bacterial, viral, and fungal infections starting in the first months of life. Chronic diarrhea, failure to thrive, and respiratory infections are common presenting features.

Early recognition matters because this is a life-threatening combined immunodeficiency. Children who are diagnosed promptly and proceed to allogeneic hematopoietic stem cell transplantation have meaningfully better outcomes than those diagnosed late, after irreversible organ damage or infection-related complications have occurred.

Types and Subtypes

MHC Class II Deficiency is classified by which gene in the class II transactivation pathway is affected. All subtypes share the same clinical picture of absent HLA class II expression, though the genes themselves are unrelated in function.

Symptoms and Signs

Symptoms usually begin in the first year of life and reflect the combined cellular and antibody defects caused by absent MHC class II expression.

Causes and Risk Factors

MHC Class II Deficiency is caused by inherited mutations in genes required for transcription of HLA class II genes, not in the HLA genes themselves.

Diagnosis and Investigations

Diagnosis combines immune phenotyping with genetic confirmation.

Disease Severity and Risk Stratification

MHC Class II Deficiency does not use a tumor-style staging system. Instead, clinicians stratify risk based on infection burden, organ involvement, and timing of diagnosis relative to transplant.

Standard Treatment Options

Treatment centers on preventing infections while pursuing curative hematopoietic stem cell transplantation as early as possible.

Advanced & Emerging Therapies

Because the immune defect is intrinsic to bone marrow-derived cells, cellular replacement strategies remain the focus of advanced care for this condition.

  • Cellular Therapy

    Allogeneic Hematopoietic Stem Cell Transplantation

    The established curative approach, using matched related, unrelated, or haploidentical donors depending on availability.

    Available
  • Cellular Therapy

    Reduced-Intensity Conditioning Protocols

    Increasingly used to lower transplant-related toxicity in infants with pre-existing organ compromise.

    Available
  • Gene Therapy

    Investigational Gene Correction Approaches

    Early-phase research is exploring gene addition or correction strategies for select primary immunodeficiencies; not yet a standard option for this condition.

    Investigational

Biomarkers & Precision Medicine

Laboratory and genetic markers guide diagnosis, transplant planning, and monitoring of immune recovery.

When a Second Opinion May Be Important

Because outcomes are time-sensitive, specialist input early in the disease course can meaningfully change the treatment path.

Clinical Trials & Research

Prognosis & Outcome Factors

Outcomes in MHC Class II Deficiency depend heavily on how early the diagnosis is made and whether transplant occurs before significant infection-related organ damage develops.

Supportive Care and Living with MHC Class II Deficiency

Supportive care addresses infection prevention, nutrition, and family wellbeing throughout diagnosis and the transplant journey.

How CancerFax Helps You Explore Treatment Options

CancerFax helps families of children with MHC Class II Deficiency obtain specialist immunology report review, coordinate second opinions, and connect with hospitals experienced in pediatric hematopoietic stem cell transplantation, including cross-border care coordination where relevant.

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Frequently Asked Questions

MHC Class II Deficiency, also called Bare Lymphocyte Syndrome Type II, is a rare inherited immunodeficiency in which immune cells cannot display HLA class II molecules, impairing the body's ability to fight infections and mount normal antibody responses.

Exploring Care Options for MHC Class II Deficiency?

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